FastQCFastQC Report
Wed 8 May 2024
EGAF00008119845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008119845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101063
Total Bases30.4 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT72957.218269792109871No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT55185.459960618624027No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT52015.146294885368532No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT46604.6109852270366005No Hit
CCTACGGGCGGCTGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT42954.249824366979013No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT30042.972403352364367No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT25452.5182312023193454No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT23512.3262717314942165No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT17801.7612776189109762No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT12031.1903466154774744No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT11921.1794623155853279No Hit
CCTACGGGCGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT10601.0488507168795702No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT8910.881628291263865No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT7240.716384829264914No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT6270.6204050938523495No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT6020.5956680486429257No Hit
CCTATGGGTGGCTGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT2350.23252822496858394No Hit
CCTATGGGGGGCTGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT1540.15238019849005077No Hit
CCTATGGGTGGCAGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT1300.1286326350890039No Hit
CCTATGGGCGGCTGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGAT1280.12665367147224998No Hit
CCTACGGGTGGCTGCAGACGAGGATTAGATACCCGAGTAGTCCTGTCTCT1230.12170626243036523No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGGGAACCCTGATG1110.1098324807298418No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGGGGAAGCCTGAT1060.10488507168795701No Hit
CCTACGGGTGGCTGCAGTCGTCGGCAGCGTCAGATGTGTACATAGCGGAT1030.10191662626282616No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)