FastQCFastQC Report
Sat 2 Sep 2023
EGAF00008122739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008122739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34402588
Sequences flagged as poor quality0
Sequence length154
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6376461.8534826507819704No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT900040.2616198525529533No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCGCATATGTGTAGATC891820.2592304974265308Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG694360.2018336527472875No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGT518030.15057878785165812No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTT436370.1268422015227459No Hit
TGTCAAGAAGTTGTTGGTAGTGGATCCAAAGGCACGTTTTATGACAGAAG427920.1243859909609126No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG366420.10650942888366423No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)