FastQCFastQC Report
Sat 2 Sep 2023
EGAF00008122742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008122742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61197938
Sequences flagged as poor quality0
Sequence length154
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTCCCCTTTACAAGACTTTGAAGTCATCTGGGCTGAGACAGGTGTGGA2000370.3268688562676736No Hit
TGTCAAGAAGTTGTTGGTAGTGGATCCAAAGGCACGTTTTATGACAGAAG817860.1336417576683711No Hit
CAAGAAGTTGTTGGTAGTGGATCCAAAGGCACGTTTTATGACAGAAGAAG756600.12363161647701267No Hit
AACATGTTTCTGTCCTCTGTCTCATGTCTCTCAGGCAGCAGGGCTTCCCA632880.10341524905626723No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)