FastQCFastQC Report
Sat 2 Sep 2023
EGAF00008122744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008122744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42972688
Sequences flagged as poor quality0
Sequence length154
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTCCCCTTTACAAGACTTTGAAGTCATCTGGGCTGAGACAGGTGTGGA8340421.9408653235748248No Hit
CAGCATCTTGATTCTCTTATTCTGAATATAGACTTTTTGATACCCTGAAA1825760.4248652074080169No Hit
ATCTCAAAAAAAAAAAAAAAAGGCCTCCCCTGCTTGCCACAGGTCTCCCC1679810.3909017746341583No Hit
TAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCA1404620.3268634254389672No Hit
AGTCAAGAAGAAACCACTGGATGGAGAATATTTCACCCTTCAGGTACTAA1297790.30200344926060946No Hit
GGGGACCTGGAGGGCTGGGGGGCTGGGGGGCTGAGGACCTGGTCCTCTGA1201490.2795938666903965No Hit
ATCTCAAAAAAAAAAAAAAAGGCCTCCCCTGCTTGCCACAGGTCTCCCCA987170.22972032840952375No Hit
ACAGTCAAGAAGAAACCACTGGATGGAGAATATTTCACCCTTCAGGTACT642540.1495228783454272No Hit
AAAACAGTCAAGAAGAAACCACTGGATGGAGAATATTTCACCCTTCAGGT589130.1370940537859768No Hit
AAACAGTCAAGAAGAAACCACTGGATGGAGAATATTTCACCCTTCAGGTA525100.12219389208326925No Hit
TGTCAAGAAGTTGTTGGTAGTGGATCCAAAGGCACGTTTTATGACAGAAG524930.1221543320725015No Hit
ATCTCAAAAAAAAAAAAAAAAAGGCCTCCCCTGCTTGCCACAGGTCTCCC481490.11204558579160791No Hit
CCTGGGTACATAAGAAGGTGAACAGTTTGCAAGGGGAAGTTTGAATTACT457710.10651183840303403No Hit
GCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGTTCCATTATAAATG442310.10292816683936551No Hit
ATCTCAAAAAAAAAAAAAAGGCCTCCCCTGCTTGCCACAGGTCTCCCCAA441860.10282344916380376No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)