FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008122751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008122751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25793154
Sequences flagged as poor quality0
Sequence length154
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5258722.0388045603108482No Hit
TTCTCCTAATTGTGAGATATATTATCAAAGTCCTTTATCACTTTGTATGG860120.33346833039495677No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT613510.23785768890458298No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG442430.17153001141310598No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTT311400.12072970990674502No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGT302360.11722490394156526No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAAGCCTGAGTGTAGATC287020.11127758939445714Illumina Single End PCR Primer 1 (97% over 34bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)