FastQCFastQC Report
Fri 1 Sep 2023
EGAF00008122842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008122842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32307952
Sequences flagged as poor quality0
Sequence length154
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAATTGTTGCTTTAGCTCTGGACCTTGTCAAGAAGTTGTTGGTAGTG374560.11593430620424347No Hit
TGTCAAGAAGTTGTTGGTAGTGGATCCAAAGGCACGTTTTATGACAGAAG373320.11555049976550666No Hit
AACATGTTTCTGTCCTCTGTCTCATGTCTCTCAGGCAGCAGGGCTTCCCA351390.10876269718365311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)