FastQCFastQC Report
Sat 2 Sep 2023
EGAF00008122881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008122881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59814154
Sequences flagged as poor quality0
Sequence length154
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5228030.8740456314069075No Hit
CCTGGGTACATAAGAAGGTGAACAGTTTGCAAGGGGAAGTTTGAATTACT766570.1281586294775648No Hit
GCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGTTCCATTATAAATG681580.11394961801181706No Hit
TGTCAAGAAGTTGTTGGTAGTGGATCCAAAGGCACGTTTTATGACAGAAG654470.10941724595820582No Hit
CACTGAAAATAATTTCAGCATGCATTGGATACCTATGAGAAATTTTTCCC599350.1002020357923979No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)