FastQCFastQC Report
Sat 2 Sep 2023
EGAF00008122983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008122983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41650076
Sequences flagged as poor quality0
Sequence length154
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16732844.017481264620022No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG1110260.26656854119545903No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGG901030.21633333874348754No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT803190.19284238520957322No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG751160.18035021112566518No Hit
CGTAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCGTGTGATGTGTA735000.17647026622472428Illumina Single End PCR Primer 1 (97% over 35bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG694640.16678000779638433No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG663240.15924100594678386No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG616030.14790609265634955No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCGTGTGATGTGTAGATC614010.14742109954373192Illumina Single End PCR Primer 1 (97% over 35bp)
CGTATAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCGTGTGATGTGT516400.12398536799788794Illumina Single End PCR Primer 1 (97% over 35bp)
CGTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCGTGTGATGTGTAG465960.11187494591846604Illumina Single End PCR Primer 1 (97% over 35bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGG447120.10735154480870573No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)