FastQCFastQC Report
Sat 2 Sep 2023
EGAF00008123037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43549052
Sequences flagged as poor quality0
Sequence length154
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19985424.589174524396077No Hit
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAG805880.18505110053830795Illumina Single End PCR Primer 1 (100% over 30bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG649460.14913298227479213No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT498330.11442958620545862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)