FastQCFastQC Report
Fri 1 Sep 2023
EGAF00008123081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30901525
Sequences flagged as poor quality0
Sequence length154
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22734937.357219425254903No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG588830.19055046636047898No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT438160.14179235490805064No Hit
CGTATAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGGCATGTGT383310.12404242185458485Illumina Single End PCR Primer 1 (97% over 36bp)
CGTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGGCATGTGTAG373930.12100697295683628Illumina Single End PCR Primer 1 (97% over 36bp)
CGTAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGGCATGTGTA312050.1009820712731815Illumina Single End PCR Primer 1 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)