FastQCFastQC Report
Sat 2 Sep 2023
EGAF00008123085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34257476
Sequences flagged as poor quality0
Sequence length154
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6627691.9346696761898046No Hit
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAG1196890.34938067241147597Illumina Single End PCR Primer 1 (100% over 30bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)