FastQCFastQC Report
Sat 2 Sep 2023
EGAF00008123115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35900267
Sequences flagged as poor quality0
Sequence length154
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14365304.001446563057595No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG876330.24410124860631258No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCTCAGTTGTGTAGATCT733850.20441352149275102Illumina Single End PCR Primer 1 (96% over 32bp)
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAG660270.1839178521987037Illumina Single End PCR Primer 1 (100% over 30bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT624340.1739095700875985No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGG562920.15680106223165416No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG482080.1342831238553184No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG470090.1309433158254784No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG468500.13050042218348962No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG439880.12252833662769137No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCTCAGTTGTGTAGATC433390.12072055062988807Illumina Single End PCR Primer 1 (96% over 33bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)