FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55342301
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGGGCGAG5456842698.6016573470626No Hit
ATCGGGCGAG1664390.30074463293457926No Hit
ATAGGGAGAG1242590.2245280694057155No Hit
ATAGGGCGAA799840.14452597480542054No Hit
AAAGGGCGAG592140.10699591258411897No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)