FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56481795
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGGGCGAG5573885898.68464343245465No Hit
ATCGGGCGAG1493490.26441971258172653No Hit
ATAGGGAGAG1191760.2109989599303634No Hit
ATAGGGCGAA823980.14588417382981544No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)