FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47484901
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTGAGTA4719479699.38905842933104No Hit
NGCGTGAGTA649910.13686666420553345No Hit
CGCGTGAGTG538970.1135034481802963No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)