FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences576114403
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGGTCGT56986173998.91468361710096No Hit
GTAGGGTCGT20736180.3599316367030664No Hit
NTAGGGTCGT7636890.132558567538538No Hit
TGAGGGTCGT6754500.11724233875819279No Hit
TTAGGGTCGG6533500.11340629510350915No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)