FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34021193
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGGTGTC3346573598.36731768930032No Hit
GGTTGGTGTC1882260.5532610217401842No Hit
GTGTGGTGTC775220.22786384945407412No Hit
GTTTGGTGTA463040.13610339884318579No Hit
NTTTGGTGTC444180.13055979547807156No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)