FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372469282
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGTATAG36641570198.3747435580473No Hit
GTGAGTATAG26373240.7080648331155533No Hit
NTGAGTATAG11684750.31371043371034285No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)