FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33803473
Sequences flagged as poor quality0
Sequence length10
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATTGACAC3345725098.97577683807815No Hit
NTATTGACAC1284710.3800526650027942No Hit
TTATTGACAA714730.21143685443208748No Hit
TTATAGACAC509840.150824739221322No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)