FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366205538
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGAGGAAG36118003898.62768323290622No Hit
NCGGAGGAAG13859710.37846806128857613No Hit
CCGGAGGCAG9389990.2564131075483626No Hit
CCGGAGGACG6880900.18789721306726934No Hit
CCGGAGGAAA5492170.14997506673424474No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)