FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480205699
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCCCTGAT47659069699.24719698089214No Hit
AAGCCCTGAG5526140.11507860093097312No Hit
AAGCCCAGAT5046820.10509704508942115No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)