FastQCFastQC Report
Sat 2 Sep 2023
EGAF00008123595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415204957
Sequences flagged as poor quality0
Sequence length120
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT34075380.8206881788263429Clontech SMART CDS Primer II A (100% over 26bp)
GCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT6264660.15088114663332403Clontech SMART CDS Primer II A (100% over 24bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4646580.1119105136309825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)