FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21211868
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGACATAC2106314999.29888777358033No Hit
CACGACATAC276480.1303421273411658No Hit
CCCGACCTAC271950.12820653041966884No Hit
CCCGACATAG258810.12201188504473062No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)