FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173224445
Sequences flagged as poor quality0
Sequence length10
%GC29

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTAACTA17077934898.58848039605496No Hit
ACAGTAACAA4437600.2561763150691578No Hit
ACAGTAAATA3363830.19418910535403938No Hit
ACAGTNACTA3252450.1877592969052376No Hit
AAAGTAACTA2996700.17299521438790003No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)