FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169528046
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCTTG16690258798.45131288778023No Hit
GTTATCCTTG5052940.2980592367589726No Hit
TTTATCCTAG2226390.131328712418475No Hit
TTTCTCCTTG2065170.12181878153659602No Hit
TTTATCATTG1761690.10391731878983612No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)