FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008123693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008123693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences167756988
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCTTG16510579298.41962112481419No Hit
GTTATCCTTG5347130.3187426088026807No Hit
TTTATCCTAG2174140.12960056245168158No Hit
TTTCTCCTTG2098320.12508092956461522No Hit
TTTATCATTG1826830.10889740104298964No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)