FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008124289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008124289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1717
Total Bases248.9 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC97156.552125800815375No Hit
TGCTGATCATTGTTGATTCAAGTGCTACACCTTGTAGAACCATGTCGTCA17910.42516016307513No Hit
TGCTGATCATTGTTGCTTCAAGTGCTACACCTTGTAGAACCATGTCGTCA17910.42516016307513No Hit
TGCTGATCACTGTTGATTCAAGTGCTACACCTTGTAGAACCATGTCGTCA271.57251019219569No Hit
TGCTGATCATTGTTGCTTTGGGGGGTGAGGAAAAGTCTGGAGTATTTCCT110.64065230052417No Hit
TGCTGATCATTGTTGCTTTAAGTGCTACACCTTGTAGAACCATGTCGTCA90.52417006406523No Hit
TGTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT80.46592894583576006No Hit
TGCTGATCATTTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCT70.4076878276062901No Hit
TGCTATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT70.4076878276062901No Hit
TGCTGATCATTGTTGCTTTGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT60.34944670937682004No Hit
TGCTGATCATTGTTGCTTTGGGGGTGGGGAAAAGTCTGGAGTATTTCCTC50.29120559114735No Hit
TGCTGATATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT50.29120559114735No Hit
TGCTGATCATTGTTGCTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT40.23296447291788003No Hit
TGCTGACATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT40.23296447291788003No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTG40.23296447291788003No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTCCCTC30.17472335468841002No Hit
TGTTGATTCAAGTGCTACACCTTGTAGAACCATGTCGTCAGTGTAGATCT30.17472335468841002No Hit
TGCGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT30.17472335468841002No Hit
TGCTGATCATAGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC30.17472335468841002No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCCGGAGTATTTCCTC30.17472335468841002No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTGTTTCCTC30.17472335468841002No Hit
TGCTGTCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT30.17472335468841002No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTAATTCCTC30.17472335468841002No Hit
TGCTGATCAATGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC30.17472335468841002No Hit
TGCTGATCACTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCAC20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAATATTTCCTC20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTGCTC20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGGAAAGTCTGGAGTATTTCCTC20.11648223645894001No Hit
TGCTGATCATTGTTGCTTCAAGTGCCACACCTTGTAGAACCATGTCGTCA20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGAGAGGAAAAGTCTGGAGTATTTCCTC20.11648223645894001No Hit
TGCTGATCATTGTTGATTCAATGCTACACCTTGTAGAACCATGTCGTCAG20.11648223645894001No Hit
TGCTGATCTTTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC20.11648223645894001No Hit
TGCTGATCATTGGTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTGCTC20.11648223645894001No Hit
TGCTGATCATTGTTGTTTCAAGTGCTACACCTTGTAGAACCATGTCGTCA20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGATAAGTCTGGAGTATTTCCTC20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGCGAGGAAAAGTCTGGAGTATTTCCTC20.11648223645894001No Hit
TGCTGATCATTGTTGCTTCAAGTGATACACCTTGTAGAACCATGTCGTCA20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCATC20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGCCTGGAGTATTTCCTC20.11648223645894001No Hit
TGTGATCATTGTTGCTTCAAGTGCTACACCTTGTAGAACCATGTCGTCAG20.11648223645894001No Hit
TGCTGATCATTGTTGCTATGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGTTAAAAAATAGTAGAGGGATGATGCTAAT20.11648223645894001No Hit
TGCTGATCTTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT20.11648223645894001No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCGTC20.11648223645894001No Hit
TGCTGATCATGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT20.11648223645894001No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)