FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008124446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008124446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences239
Total Bases34.6 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC10343.09623430962343No Hit
AGCACTTGAAGCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC7230.125523012552303No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC2610.87866108786611No Hit
AGCACTTGAATCAACAGTGATCAGCACTATCGAGACCAAGTCTCTGCTAC104.184100418410042No Hit
AGCACTTAAAGCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC41.6736401673640167No Hit
AGCACTTGAATCAACAATGTCAGCACTATCGAGACCAAGTCTCTGCTACC20.8368200836820083No Hit
AGCACTTGAATCAACAGGCTGCCCAAAGCAACAATGATCAGCACTATCGA10.41841004184100417No Hit
AGCACTTGAATCAACAATGATCAGCCAATAGTGGCCAAATAAATGCAACC10.41841004184100417No Hit
AGCACTTGAATCAACAATGATCAGCAATATCGAGACAAAGACACTGCTAC10.41841004184100417No Hit
AGCACTTGAATCAACATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.41841004184100417No Hit
AGCACTTGAAACAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC10.41841004184100417No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTCAAACTCACACC10.41841004184100417No Hit
AGCACTTGAATCAACAATGATCAGCACTATCGAGACCAAGTCACTGCTAC10.41841004184100417No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACCCACAC10.41841004184100417No Hit
AGACTTGAATCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.41841004184100417No Hit
AGCACTTGAATCAACAATGATCAGCACTATCGAGACCAAGACTCTGCTAC10.41841004184100417No Hit
AGCACTTGAAGCAACAATGATCAGCTCTATCGAGACGAAGTCTCTGCTAC10.41841004184100417No Hit
AGCACTTAAAGCAACAATGATCAGCACTATCGAGACCAAGACTATGCTAC10.41841004184100417No Hit
AGCACTTGAATCAACAATGATCAGCACTATCGAGACCTAGTCTCTGCTAC10.41841004184100417No Hit
AGCACTGAAGCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.41841004184100417No Hit
AGCACTATCGAGACCAAGTCTCTGCTACCGTATCGATCGACAATGTCGTA10.41841004184100417No Hit
AGCACTTAAAACAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC10.41841004184100417No Hit
AGACTTGAAGCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.41841004184100417No Hit
AGCACTTGTATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC10.41841004184100417No Hit
AGCACTTGAATCAACAGTGATCACACTATCGAGACCAAGTCTCTGCTACC10.41841004184100417No Hit
ACACTTGAATCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.41841004184100417No Hit
AGCACTTGAAGCAACAATGATCAGACTATCGAGACCAAGTCTCTGCTACC10.41841004184100417No Hit
AGCACTTGAATCAACAATAATCAGCACTATCGAGACCAAGTCTCTGCTAC10.41841004184100417No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)