FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008124641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008124641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187
Total Bases27.1 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGATCATTGTTGATTCAAGTGCTACACCTTGTAGAACCATGTCGTCA8143.31550802139038No Hit
TGCTGATCATTGTTGCTTCAAGTGCTACACCTTGTAGAACCATGTCGTCA6936.898395721925134No Hit
TGCTGATCATTGTTGCTTTAAGTGCTACACCTTGTAGAACCATGTCGTCA31.6042780748663104No Hit
TGCTGATATTGTTGATTCAAGTGCTACACCTTGTAGAACCATGTCGTCAG31.6042780748663104No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC31.6042780748663104No Hit
TGCTGATCATTGTTGATTCAAGTGCAACACCTTGTTGAACCATGTAGTAA10.53475935828877No Hit
TGCTGATCATTGTTGCTTTGGGGGTAAGGAAAAGTCTGGAGTATTTCCTC10.53475935828877No Hit
TGCTGATCACTGTTGATTCAAGTGCACACCATGTAGAACCATGTCGTCAG10.53475935828877No Hit
TGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNNNATAAGTAN10.53475935828877No Hit
TGCTGATCATTGATGCTTCAAGTGCTACACCTTGTAGAACCATGTCGTCA10.53475935828877No Hit
TGCGGATCATTGTTGATTCAAGGGCAACACCTTGTAGAACCATGTCGTGA10.53475935828877No Hit
TGTGATCATTGTTGCTTCAAGTGCTACACCTTGTAGAACCATGTCGTCAG10.53475935828877No Hit
TGCTGATCATTGTTGCTTCAAGTGCAACACCTTGTAGAACCATGTCGTCA10.53475935828877No Hit
TGCTGATCATTGTTGCATCAAGTGCTACACCTTGTAGAACCATGTCGTCA10.53475935828877No Hit
TGCTGATCACTGTTGATTCAAGTGCTACACCTTGTAGAACCATGTCGTCA10.53475935828877No Hit
TGCTGATCATTGTTGATTAAGTGCTACACCTTGTAGAACCATGTCGTCGT10.53475935828877No Hit
TGTGTTTTTTTGTGGGGTTATTTGTTTTTGTTTTTTCACCCCTGGGGGGA10.53475935828877No Hit
TGCTGATCATTGTTGATTCAAGTGGCGGCCCCGGCGGGGCGGGGCGGGCC10.53475935828877No Hit
TGCTGATCATTGTTGATTCACGTGCGACACCTTGTAGAACCATGTCGTCA10.53475935828877No Hit
TGCTGATCATGGGGGCGGCCCGGGCGCCCCCGGGGCGCCCCCGGGCGGCC10.53475935828877No Hit
TGCTGATCATTGTTGATTCAAGTGCTACACCTTGTAGAACATGTCGTCAG10.53475935828877No Hit
TGCTGATCAATGTTGATTCAAGTGCTACACCTTGTAGAACCATGTCGTCA10.53475935828877No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAGAGTCTGGAGTATTTCCTC10.53475935828877No Hit
AGCTGATCACTGGAGAAACAAGTGAAACACCTTGTAGAACCATGTCGTCA10.53475935828877No Hit
TGCTGATCATTGTTGCTTTGGGGGTGGGGAAAAGTCTGGAGTATTTCCTC10.53475935828877No Hit
TGCTGATCATTGTTGATTCAAGTGCTACACCTTGTAGAACCAGTCGTCAG10.53475935828877No Hit
TGCTGATCATTGTTGATTCAATGCTACACCTTGTAGAACCATGTCGTCAG10.53475935828877No Hit
TGCTGATCATTGTTGATTCAAGTGCTACACCTTGTAGAACCATGTCGCAG10.53475935828877No Hit
TGCTGATCATTGGTGATACTAGTGCTACACCTTGTAGAACCATGTCGTCA10.53475935828877No Hit
TGCTGATCATTGTTGATCAAGTGCTACACCTTGGAGAACCATGTCGTCAG10.53475935828877No Hit
TGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN10.53475935828877No Hit
TGCTGATCATTGTTGCTTCAAGTCTACACCTTGTAGAACCATGTCGTCAG10.53475935828877No Hit
TGCTGAGGGGTGGGTTGGTTTTTGGGGTTTTGTGGTTTTTTTCTACTTAT10.53475935828877No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)