FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008125024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008125024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169
Total Bases24.5 kbp
Sequences flagged as poor quality0
Sequence length145
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC7946.74556213017752No Hit
AGCACTTGAAGCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC6035.50295857988166No Hit
AGCACTTGAATCAACAGTGATCAGCACTATCGAGACCAAGTCTCTGCTAC137.6923076923076925No Hit
AGCACTTAAAGCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC31.7751479289940828No Hit
AGCACTTGAATCAACAATGATCAGCCTATCGAGACCAAGTCTCTGCTACC21.183431952662722No Hit
AGCACTTGAATCAACAGTGATCAGCACTATCGAGACGAAGTCTCTGCTAC10.591715976331361No Hit
AGCACTTGATGCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC10.591715976331361No Hit
AGCACTTAATCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.591715976331361No Hit
AGCACTTGAAGCAACAATATCAGCACTATCGAGACCAAGTCTCTGCTACC10.591715976331361No Hit
GCACTTGATGCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.591715976331361No Hit
AGCACTTGAAGCAACACTGATCAGCACTATCGAGACCAAGTCTCTGCTAC10.591715976331361No Hit
AACACTTGAATCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTAC10.591715976331361No Hit
AGCATTGAATCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.591715976331361No Hit
AGCACTTGAATCAACAATGATAGCACATAACAGACCAAATAAAGGCATCC10.591715976331361No Hit
AGACTTGAAGCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.591715976331361No Hit
AGACTTGAATCAACAATGATCAGCACTATCGAGACCAAGTCTCTGCTACC10.591715976331361No Hit
AGCACTTGAAGCAACAATGATCAGCACTATCGAGACCAAGTCACTGCTAC10.591715976331361No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)