FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008125290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008125290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15
Total Bases2.1 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC533.33333333333333No Hit
GCATTGCCTGGGGATTTGACAGCTGAGGAGGGTCTAGATCCTCTTGACAG426.666666666666668No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA213.333333333333334No Hit
GCATTGCCTGGGGATTTGACAGCTGAGGAGGGTCTAGATCCTCTTGGCAG16.666666666666667No Hit
GCATTGCCTGGGGATTTGACAGCTGAGGAGGGTCTAGATCCTCTTGACGG16.666666666666667No Hit
GCAAAAGTTCTCAGGGATGTCCTTCCCACTTTTCATAACGAGTTGGAGCC16.666666666666667No Hit
GCATTGCCTGGGGATTTGACGGCTGAGGAGGGTCTAGATCCTCTTGACAG16.666666666666667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)