FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008125794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008125794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences243
Total Bases35.2 kbp
Sequences flagged as poor quality0
Sequence length145
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCAACCGAAAGACCAAGTCTCTGCTAC14860.90534979423868No Hit
AGCACTTGAAGCAACAATGATCAGCAACCGAAAGACCAAGTCTCTGCTAC5623.045267489711936No Hit
AGCACTTGAATCAACAGTGATCAGCAACCGAAAGACCAAGTCTCTGCTAC62.4691358024691357No Hit
AGCACTTGAATCAACAACCGAAAGACCAAGTCTCTGCTACCGTAACGGTG31.2345679012345678No Hit
AGCACTTGATCAGCAACCGAAAGACCAAGTCTCTGCTACCGTAACGGTGC20.823045267489712No Hit
AGCACTTGAATCAACAATGATCACAACCGAAAGACCAAGTCTCTGCTACC20.823045267489712No Hit
AGCATTGAATCAACAATGATCAGCAACCGAAAGACCAAGTCTCTGCTACC20.823045267489712No Hit
AGTACTTGAATCAACAATGATCAGCAACCGAAAGACCAAGTCTCTGCTAC10.411522633744856No Hit
AGCACTTGAATCAACAATGACAGCAACCGAAAGACCAAGTCTCTGCTACC10.411522633744856No Hit
AGCACTTGAAGCAACAATGATCAACAACCGAAAGACCAAGTCTCTGCTAC10.411522633744856No Hit
AGCACTTGAACAACAATGATCAGCAACCGAAAGACCAAGTCTCTGCTACC10.411522633744856No Hit
AGCACTTGAATCAACAGTGATCAGCAACCGAAAGACAAAGTCACTGCTAC10.411522633744856No Hit
AGCACTTGAAGCAACAATGACAGCAACCGAAAGACCAAGTCTCTGCTACC10.411522633744856No Hit
AGCACTTGAATCAACAATGATCAGCAACCGAAAGACCAAGTCACTGCTAC10.411522633744856No Hit
AGCACTTGAAGCAACAATGATCAGCAACCGAAACACCAAGACACTGCTAC10.411522633744856No Hit
AGCACTTGAAACAACAATGATCAGCAACCGAAAGACCAAGTCTCTGCTAC10.411522633744856No Hit
AGCACTTGAAGCAACAATGATCAGCAACCGAAAGACCAAGTCTCAGCTAC10.411522633744856No Hit
AGCACTTGAATCAACAACCGAAAGACCAAGTCTCTGCTACCGCAAAGCAA10.411522633744856No Hit
AGTACTTGAAGCAACATGATCAGCAACCGAAAGACCAAGTCTCTGCTACC10.411522633744856No Hit
AGCACTTGAAGCAACAATGATCAGCAACCGAAAGACGAAGTCTCTGCTAC10.411522633744856No Hit
AGCACTTGAATCAACAATGATCAGCAACCGAAAGACAAAGTCTCTGCTAC10.411522633744856No Hit
AGCACTTGAATCAACAGCACTGACGACATGGTTCTACATCACAAAGCAAC10.411522633744856No Hit
AGCACTTGAATCAACAAGATCAGCAACCGAAAGACCAAGTCTCTGCTACC10.411522633744856No Hit
AGCACTTGAATCAACAGTGATTAGCAACCGAAAGACCAAGTCTCTGCTAC10.411522633744856No Hit
AGCACTTGAATCAACAGTGATCAGAACCGAAAGACCAAGTCTCTGCTACC10.411522633744856No Hit
AGCACTTGAATCAACATGATCAGCAACCGAAAGACCAAGTCTCTGCTACC10.411522633744856No Hit
AGCACTTGAATCAACAATGAACAGCAACCGAAAGACCAAGTCTCTGCTAC10.411522633744856No Hit
AGCACTTGAATCAACACTGATCAGCAACCGAAAGACCAAGTCTCTGCTAC10.411522633744856No Hit
AGCACTTGAAGCAACAATGAACAGCAACCGAAACACCAAGACACTGCTAC10.411522633744856No Hit
AGACTTGAAGCAACAATGATCAGCAACCGAAAGACCAAGTCTCTGCTACC10.411522633744856No Hit
AGCACTTGAATCAACATGATCACAACCGAAAGACCAAGTCTCTGCTACCG10.411522633744856No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)