FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008126440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008126440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences268
Total Bases38.8 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTAC9234.32835820895522No Hit
AGCACTTGAAGCAACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTAC7026.119402985074625No Hit
AGCACTTGAATCAACAAAGACGAGACCAAGTCTCTGCTACCGTATTACAC269.701492537313433No Hit
AGCACTTGAATCAACAGTGATCAGCAAAGACGAGACCAAGTCTCTGCTAC228.208955223880597No Hit
AGCACTTGATCAACAAAGACGAGACCAAGTCTCTGCTACCGTATTACACG51.8656716417910446No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC51.8656716417910446No Hit
AGCACTTAAAGCAACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTAC51.8656716417910446No Hit
AGCAACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTACCGTATTACA31.1194029850746268No Hit
AGCACTTGAATCAACAATGATCAGCAAAAGACGAGACCAAGTCTCTGCTA20.7462686567164178No Hit
AGCACTTGAAGCAACAATGATCAGCAAAGACGAGACCAAGACTCTGCTAC20.7462686567164178No Hit
AGCACTTGAATCAACAATGACCAGCAAAGACGAGACCAAGTCTCTGCTAC20.7462686567164178No Hit
AGCACTTGAAACAACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTAC20.7462686567164178No Hit
AGCACTTGAATCAACAAAGACGAGACCAAGTCTATGCTACCGAAATACAC10.3731343283582089No Hit
AGCACTTGAAGCAACAAGATCAGCAAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit
AGCACTTGAAGCGACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTAC10.3731343283582089No Hit
AGCACTTGAATCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTA10.3731343283582089No Hit
AGCACTTGAATCAACAATGATCAGCTAAGACGAGACCAAGTCTCTGCTAC10.3731343283582089No Hit
AGCACTTGAATCAACAAAGACGAGACCAAGTCTCTGCTACCGTAATACAC10.3731343283582089No Hit
ACAAATTAATCAACAAACAAGAGACCAAGACTCAGATACAGTATAACAAC10.3731343283582089No Hit
AGACTTGAATCAACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit
AGCACTTAAAGCAACACTGATCAGCAACGACGCGACCAAGTCTCTGCTAC10.3731343283582089No Hit
AGCACTTGAAGCAACAATGATCAGCAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit
AGCACTTGAAGCAGCAATGATCAGCAAAGACGAGACCAAGTCTCTGCTAC10.3731343283582089No Hit
AGACTTGAAGCAACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit
AGCACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTACCGTATTACAC10.3731343283582089No Hit
AGCACTTGAAGCAACAATGATAGCAAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit
AGCACTTGAATCAACAATGATCAGCAACGACGAGACCAAGTCTCTGCTAC10.3731343283582089No Hit
AGCAACATGATCAGCAAAGACGAGACAAAGTCTCTGCTACCGTATTACAC10.3731343283582089No Hit
AGCACTTGAATCAACACACTGACGACATGGTTCTACACACCAAAGCAACA10.3731343283582089No Hit
AGCACTTGAAGCAACAATGATCAGCAAAAGACGAGACCAAGTCTCTGCTA10.3731343283582089No Hit
GCACTTGAAGCAACAATGATCAGCAAAGACGAGACCAAGACTCTGCAACC10.3731343283582089No Hit
AGCACTTGAATCAACAATGATCACAAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit
AGCACTTGAAGCAACAATATCAGCAAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit
AGCACTTGAATCAACAATATCAGCAAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit
AGCACTTGAATCAACAATGATCAGCAAAGACGAGACCAAGTCTCAGCTAC10.3731343283582089No Hit
AGCACTTGAAGCAACATGATCAGCAAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit
AGCACTTGAATCAACAATGGTCAGCAAAGACGAGACCAAGTCTCTGCTAC10.3731343283582089No Hit
ACCACTTGAATCAACAAAGATCAGCAAAGACGAGACCAAGTCTCTGCTAC10.3731343283582089No Hit
AGCACTTGAATCAACAATGATCAGCAAAGACGAGACCAAGTCACTGCTAC10.3731343283582089No Hit
GCACTTGAATCAACAAAGACGAGACCAAGTCTCTGCTACCGTATTACACG10.3731343283582089No Hit
AGCACTTGAATCAACAGTGATCAGCAAAGACGAGACCAAGTCACTGCTAC10.3731343283582089No Hit
CGCACTTGAAGCAACAATGATCAGCAAAGACGAGACCAAGTCTCTGCTAC10.3731343283582089No Hit
AGCACTTGAATCAACAAAGACGAGACAAAGTCTCTGCTAACGTATTACAC10.3731343283582089No Hit
AGCACTTGAATCAACAATGATCAGAAAGACGAGACCAAGTCTCTGCTACC10.3731343283582089No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)