FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008126690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008126690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences281
Total Bases40.7 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCATTACGCAGACCAAGTCTCTGCTAC14049.8220640569395No Hit
AGCACTTGAAGCAACAATGATCAGCATTACGCAGACCAAGTCTCTGCTAC6322.419928825622776No Hit
AGCACTTGAATCAACAGTGATCAGCATTACGCAGACCAAGTCTCTGCTAC227.829181494661921No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC134.6263345195729535No Hit
AGCACTTGAATCAACAATGATCAGCATTACGCAGACCAAGTCACTGCTAC31.0676156583629894No Hit
AGCACTTGAATCAACAATGATCACATTACGCAGACCAAGTCTCTGCTACC20.7117437722419928No Hit
ACACTTGAATCAACAGTGATCAGCATTACGCAGACCAAGTCTCTGCTACC20.7117437722419928No Hit
AGACTTGAATCAACAATGATCAGCATTACGCAGACCAAGTCTCTGCTACC20.7117437722419928No Hit
AGCACTTGAATCAACAATGATCGCATTACGCAGACCAAGTCTCTGCTACC20.7117437722419928No Hit
AGTACTTGAATCAACAATGATCAGCATTACGCAGACCAAGTCTCTGCTAC10.3558718861209964No Hit
AGCATTGAATCAACAGTGATCAGCATTACGCAGACCAAGTCACTGCTACC10.3558718861209964No Hit
AGCACTTGAAGCAACAATGATCAGCATTACGCAGACCAAGTCACTGCTAC10.3558718861209964No Hit
AGCACTTGAATCAACAATGATCAGCATTACTCAGACCAAGTCTCTGCTAC10.3558718861209964No Hit
AGCACTTGAAGCAACAATGATCAGCATTACGCAGACCAAGTCACTGCTAA10.3558718861209964No Hit
AGCACTTGAATCAACAGTGATCAGCATTACTCAGACCAAGTCTCTGCTAC10.3558718861209964No Hit
AGCACTTGAATCAACAGGCTGGAGAAGAGGTAGGGAAGGAAGGTGGAGAG10.3558718861209964No Hit
AGCACTTGAAGCAACAATGATCACATTACGCAGACCAAGTCTCTGCTACC10.3558718861209964No Hit
AGCACTGAATCAACAGTGATCGCATTACGCAGACCAAGTCTCTGCTACCG10.3558718861209964No Hit
AGCACATGAATCAACAGTGATCAGCATTAAGCAGACCAAGTCTCTGCTAC10.3558718861209964No Hit
GGTGTTTGGGATGGAATGGTGGACAAGGATGAGTTACGCAGACCAAGTCT10.3558718861209964No Hit
AGCACTTGAAGCAACAATGACAGCATTACGCAGACCAAGTCTCTGCTACC10.3558718861209964No Hit
AGCACTTGAATCAACATTGTTCAGCCTTACGCAGAGGAAGTCTCTGCAAC10.3558718861209964No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACGC10.3558718861209964No Hit
AGCACTTGAATCAACATTACGCAGACCAAGTCTCTGCTACCGTAGCGAGA10.3558718861209964No Hit
AGCACTTGAATCAACAATGATCAGCATTACGCAGACCAAGACACTGCTAC10.3558718861209964No Hit
AGCACTTGAATCAACAATGACAGCATTACGCAGACCAAGTCTCTGCTACC10.3558718861209964No Hit
AGCACTTGAATCAACAATGAATCAGCATTACGCAGACCAAGTCTCTGCTA10.3558718861209964No Hit
AGCACTTGAAGCAACAATGATCAGCATTACGCAGACCAAGTCTCTGATAC10.3558718861209964No Hit
AGCACTTGAAGCAACAATGATCAGCATTACGAATACCAAGTCAAAGCTAA10.3558718861209964No Hit
AGCACTTAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACACC10.3558718861209964No Hit
GGCACTTGAATCAACAATGATCAGCATTACGCAGACCAAGTCTCTGCTAC10.3558718861209964No Hit
AGCACTTGAATCAACAATGATCAGCATTACGCAGACCAAGTCTCTGCAAC10.3558718861209964No Hit
AGCACTTGAATCAACAATGATCAGAATTACGCAGACCAAGTCTCTGCTAC10.3558718861209964No Hit
AGCACTTGAGCAACAATGATCAGCATTACGCAGACCAAGTCTCTGCTACC10.3558718861209964No Hit
AGCACTTGAATCAACAATGATCAGCATTACGCGGACCAAGTCTCTGCTAC10.3558718861209964No Hit
AGCATTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACACC10.3558718861209964No Hit
GCACTTGAAGCAACAATGATCAGCATTACGCAGACCAAGTCTCTGCTACC10.3558718861209964No Hit
AGCACTTGAAGCAACAATGGTCAGCATTACGCAGACCAAGTCTCTGCTAC10.3558718861209964No Hit
AGCACTTGAATCAACAATATCAGCATTACGCAGACCAAGTCTCTGCTACC10.3558718861209964No Hit
AGCACTGAATCAACAATGATCAGCATTACGCAGACCAAGTCTCTGCTACC10.3558718861209964No Hit
AGCACTTGAATCAACAGGCCTACAAAGTGGTGGTGGTAAAAAACACACTT10.3558718861209964No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)