FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008126945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008126945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences270
Total Bases39.1 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGATCATTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCA13951.48148148148148No Hit
TGCTGATCATTGTTGCTTCAAGTGCTCCTCTATGTAGAACCATGTCGTCA5520.37037037037037No Hit
TGCTGATCACTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCA217.777777777777778No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC82.9629629629629632No Hit
TGCTCATCATTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCA20.7407407407407408No Hit
TGCTGATCATTTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG20.7407407407407408No Hit
TGCTGTGTTTGTTTTTTTTGTTTTTTGTTTTTTTGTCTCTTTACAAGTAG10.3703703703703704No Hit
TGCTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAGTGTAGATCT10.3703703703703704No Hit
TGCTGATCATTGTTGCTTCAAGTGCTCATCTATGTTGAAACATGTAGTCA10.3703703703703704No Hit
TGCTGATCATTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGACGTCA10.3703703703703704No Hit
TGCTATCATTGTTGCTTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCATTGTTGATTCAAGTGCTCCTCTATGTTGAACCATGTAGTCA10.3703703703703704No Hit
TGCAGATCATTGTTGATTCAAGTGCTACTCTATGTAGATCAATGTCGTCA10.3703703703703704No Hit
TGCTGATCATTGTGCTTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCATTGTACTTTCAAGTGCTCCTCTATGTAGAAGCATGTCGTCA10.3703703703703704No Hit
TGCTGATCATTGTTGATTCAAGTGCTCCTCTATCGGGGGGGGGGGGGGGG10.3703703703703704No Hit
TGCTGATCATTGTTAATTCAAGTGCTCCTCTAAGTAGAACCATGTCGTCA10.3703703703703704No Hit
TGCTGATCATTGTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCATTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCTTAA10.3703703703703704No Hit
TGCTGATCATTGTTGGTTCAAGTGCTCCTCTATGTTGAAGCATGTAGTCA10.3703703703703704No Hit
TGCTGATAATTGTTGCTTCAAGTGCTCCTCTATGTAGAACCATGTCGTCA10.3703703703703704No Hit
TGCTGTCATTGTTGCTTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCATTGTTGTTTCAAGTGCTCGTCTAGGTAGAACCATGTAGTCT10.3703703703703704No Hit
TGCTGATCATTGTTGATTCAAGTGCTCCTCTATGTTGAACCATGTCGTCT10.3703703703703704No Hit
TGCTGTCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTCT10.3703703703703704No Hit
TGTGATCATTGTTGATTAAAGTTGGACTAGATGTTGAAACATGTAGTAAT10.3703703703703704No Hit
TGCTGATCATTGTTGATTCAAGTGCTCCTCTAAGTAGAACCAAGTCTACA10.3703703703703704No Hit
TGCTGATCATTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGACTTCA10.3703703703703704No Hit
TGTTGATCACTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCA10.3703703703703704No Hit
TGTGATCATTGTTGCTTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATAATGTTAAATAAAATTCAACAAAATTTTAAACCAAGTAATAAA10.3703703703703704No Hit
TGCTGACATTGTTGCTTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCCTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCATTGTTGATTAAAGTGGTCCTCTTTGTAGAACCATGTCGTCT10.3703703703703704No Hit
TGCTGATCATGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCATTGTTGATTCAAGTGCCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCATTGTTGAAACAAGTGCTCCTCTATGTAGAACCATGTCGTCA10.3703703703703704No Hit
TGCTGATCATTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCTTCA10.3703703703703704No Hit
TGCTGTCATTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TACTGATCATTGTTGCTTCAAGTGCTCCTCTATGTAGAACCATGTCGTCA10.3703703703703704No Hit
TGCTGATCACTGGGGCGTCAAGTGCTCCTCTATGTAGAACCATGTCGTCA10.3703703703703704No Hit
TGCTGATCATTGTTGCTTCAAGTGTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCATTGTTGCTTCAAGTGCTAGGGGGGGGGGGGGGGGGGGGGGG10.3703703703703704No Hit
TGCTGATCACTGTTGATTCAATGCTCCTCTATGTAGAACCATGTCGTCAG10.3703703703703704No Hit
TGCTGATCTTTGTTGATTCAAGTGCTCCTCTATGTAGAACCATGTCGTCA10.3703703703703704No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAGAAGTCTGGAGTATTTCCTC10.3703703703703704No Hit
TGCTGATCACTGTTGATTCAAGTGCTCCTCTATGTAGAACATGTCGTCAG10.3703703703703704No Hit
TGCTGATCAGTTCCGTCAAGTGGGTTTCTGCGACTGAAACTATTGTTTGT10.3703703703703704No Hit
TGCTGATCACTGTTGATTCACGTGCGCCTCTATGTAGAACCATGTCGTCA10.3703703703703704No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)