FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008126982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008126982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93
Total Bases13.4 kbp
Sequences flagged as poor quality0
Sequence length145
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC4548.38709677419355No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC3436.55913978494624No Hit
AGCACTTGAATCAACAGTGATCAGCACCATGTAGACCAAGTCTCTGCTAC33.225806451612903No Hit
AGCACTTGAATCAACAGTGATAGCACCATGTAGACCAAGTCTCTGCTACC11.0752688172043012No Hit
AGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACCGTATGATA11.0752688172043012No Hit
AGCACTTGATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.0752688172043012No Hit
AGCACTTGAATCAACAATGACAGCACCATGTAGACCAAGTCTCTGCTACC11.0752688172043012No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCACTGCTAC11.0752688172043012No Hit
AGCACTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.0752688172043012No Hit
AGCACTTGAATCAACAGTGATCAACACCATGTAGACCAAGTCTCTGCTAC11.0752688172043012No Hit
AGCACTTGAAGCAACAATAATCAGCACCATGTAGACCAAGTCTCTGCTAC11.0752688172043012No Hit
AGCACTTGAATCAACAATGATCACACCATGTAGACCAAGTCTCTGCTACC11.0752688172043012No Hit
AGCACTTGAATCAACAGTGATCAGCACCATGTAGACAAACTCACTGCTAC11.0752688172043012No Hit
AGCACTTGAAGCAACAATGATCACACCATGTAGACCAAGTCTCTGCTACC11.0752688172043012No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)