FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008126984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008126984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84
Total Bases12.1 kbp
Sequences flagged as poor quality0
Sequence length145
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC5666.66666666666666No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC1315.476190476190476No Hit
AGCACTTGAATCAACAGTGATCAGCACCATGTAGACCAAGTCTCTGCTAC33.571428571428571No Hit
AGCACTTGATCAACACCATGTAGACCAAGTCTCTGCTACCGTACGCTATC22.380952380952381No Hit
GCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.1904761904761905No Hit
AGCACTTGAATCAACAGTGATTTAGCACCATGTAGACCAAGTCTCTGCTA11.1904761904761905No Hit
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGACTCTGCTAC11.1904761904761905No Hit
AGCACTTGATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.1904761904761905No Hit
AGCACTTGAATCAACAATGACAGCACCATGTAGACCAAGTCTCTGCTACC11.1904761904761905No Hit
AGCACTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.1904761904761905No Hit
AGCACTTGAATCAACAATGATCAGCACCATGTACACCAAGACACTGCTAC11.1904761904761905No Hit
AGCACTTGAATCAACAATGATCAGCACCATGAAGACCAACACACTGCTAC11.1904761904761905No Hit
AGCACTTAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.1904761904761905No Hit
AGCACTTGAATCAACAATGATCAGACCATGTAGACCAAGTCTCTGCTACC11.1904761904761905No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)