FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008127010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008127010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences278
Total Bases40.2 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC12043.16546762589928No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC8630.935251798561154No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC227.913669064748201No Hit
AGCACTTGAATCAACAGTGATCAGCACCATGTAGACCAAGTCTCTGCTAC113.9568345323741005No Hit
AGCACTTGAATCAACAATGACAGCACCATGTAGACCAAGTCTCTGCTACC20.7194244604316548No Hit
AGCACTTGATCAACACCATGTAGACCAAGTCTCTGCTACCGTAGCGTAGA20.7194244604316548No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCACTGCTAC20.7194244604316548No Hit
AGACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC20.7194244604316548No Hit
AGCACTTGAAACAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC10.3597122302158274No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTTGACCAAGTCTCTGCTAC10.3597122302158274No Hit
GCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCAAC10.3597122302158274No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACAAAGTCTCTGCTAC10.3597122302158274No Hit
AGCACTTGAATCAACAATGATCGCACCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTAACTGCTAC10.3597122302158274No Hit
AGCACTTGAAGCAACAATGACAGCACCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
AGCACTTGAATCAACAATGATCAGCCCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
AGCACTTGAATCAACAGTGATCAGCGCCATGTAGACCAAGTCTCTGCTAC10.3597122302158274No Hit
AGCACTGAATCAACAGTGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
AGCACTTGAATTAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC10.3597122302158274No Hit
AGCACTTGAATCAACAATGATCAGCGCCATGTAGACCAAGTCTCTGCTAC10.3597122302158274No Hit
TGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC10.3597122302158274No Hit
AGCATTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC10.3597122302158274No Hit
AGCACTTGAATCAACACAACCACCCACAGCCTAATTATTAGCATCATCCC10.3597122302158274No Hit
AGCACTTGAATCAACCATGTAAGTGACCTCCAAGCAGCACCCTCTCTAAG10.3597122302158274No Hit
AGCACTTGAATCAACAGGCCTCAGAGACTGAGCCATTTTCAAACTCACAC10.3597122302158274No Hit
AGCACTTGAAGCAACATGATCGCACCATGTAGACCAAGTCTCTGCTACCG10.3597122302158274No Hit
AGCACTTGAATCAACAATGATAGCACCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
GCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
AGCACTGTGAAGAGGAAAATGTATAGCACTGTGAAGAGGAAAATGTATAG10.3597122302158274No Hit
AGCACTTGAATCAACATGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
AGCACTTGAAGCAACAATGATCAGCCCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
AGCACTTGAATCAACAATGATACACAATGTAGCCAAATGCAATCCTACCG10.3597122302158274No Hit
AGCACTTGAATCAACAATGATCAGCACCATGTAGACAAAGTCTCTGCTAC10.3597122302158274No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGAACAACTCACTGCTAC10.3597122302158274No Hit
AGCACTTGAACAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit
AGCACTTGAATCAACAATGATTCAGCACCATGTAGACCAAGTCTCTGCTA10.3597122302158274No Hit
AGCACTTGAATCAACAGGCTGCACCACAGAAAGGAGAATTATCATGGGTA10.3597122302158274No Hit
AGCACTTGAAGCAACAATGATCACACCATGTAGACCAAGTCTCTGCTACC10.3597122302158274No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)