FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008127011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008127011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences278
Total Bases40.3 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC61

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGATCATTGTTGATTCAAGTGCTTCACAGTGTAGAACCATGTCGTCA12043.16546762589928No Hit
TGCTGATCATTGTTGCTTCAAGTGCTTCACAGTGTAGAACCATGTCGTCA9132.73381294964029No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC145.0359712230215825No Hit
TGCTGATCACTGTTGATTCAAGTGCTTCACAGTGTAGAACCATGTCGTCA113.9568345323741005No Hit
TGCTGATCATTGTTGCTTTTGAGGGAGATGTGAACTCTGGGATGGTTGTG31.079136690647482No Hit
TGCTGATCATTGTTGCTGGTTTTGAGGGAGATGTGAACTCTGGGATGGTT31.079136690647482No Hit
TGCTGATCATTGTTGATTCAAGTCTTCACAGTGTAGAACCATGTCGTCAG20.7194244604316548No Hit
TGTTGATCAAGTGCTTCACAGTGTAGAACCATGTCGTCAGTGTAGATCTC20.7194244604316548No Hit
TGCTGTCATTGTTGATTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAG20.7194244604316548No Hit
TGCTGATCATTGTTGATTCAAGTGCTTCACAGTGTAGACCCATGTCGTCA10.3597122302158274No Hit
TGCTGATCATTGTTGCTTTGGGTTTGTTTTGCTCTTGATTTTCTAGGTTC10.3597122302158274No Hit
TGCTGATCACTGTTGATTCAGTGCTTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TGCTGATCATGTTGATTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TGCTGATCATTGTTGCTTCGGGGGTGAGGAAAAGTCTGGAGTATTTCCTC10.3597122302158274No Hit
TGCTGATCATTGTTGATTCAAGTGCTTCACAGTGTAGAACCATGACGTCA10.3597122302158274No Hit
TGCTGATCATTGTTGATTCAAGTGCTTCACAGTGTAGAACCATGTCGTTC10.3597122302158274No Hit
TGCTGATCATTGTTGCTTTGGGAGTGAGGAAAAGTCTGGAGTATTTCCTC10.3597122302158274No Hit
TGCTGATCATTGTTGCTTCAAATGCTTCACAGTGTAGAACCATGTCGTCA10.3597122302158274No Hit
GCTGATCATTGTTGCTTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TGCTGAATCATTGTTGATTCAAGTGCTTCACAGTGTAGAACCATGTCGTC10.3597122302158274No Hit
TGCTGATNATTGTTGATNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNN10.3597122302158274No Hit
TGCTGATCATTGTTGATTCAAGTGCATCACAGTGTAGAACCATGTCGTCA10.3597122302158274No Hit
GAGATTAGTATAGAGAGGTAGAGTTTTTTTCGTGATAGTGGTTCACTGGA10.3597122302158274No Hit
TGCTGATCATTGTTGCTTTGGGGTGGTTTGATGTTTGTATTGCTATGAGG10.3597122302158274No Hit
TGCTGATCATTGTTGATTCATGTGCTTCACAGTGTAGAACCATGTCGTCA10.3597122302158274No Hit
TGCTGATCATTGTTGCATTGGTTGTGGAGGCCTTCACAGCCACCGGAAGG10.3597122302158274No Hit
TGCTGATCATTGTTGCTTTGGGGGTGAGGAAAAGTGTGGAGTATTTCCTC10.3597122302158274No Hit
TGCTGATCATTGTTGTTTCAAGTGCTTCACAGTGTAGAACCATGTCGTCA10.3597122302158274No Hit
TGTGATCATTGTTGCTTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TGCTATCATTGTTGATTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TGCTGATCATTGTTGCTTCAAGTGCTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TGCTGATCATTGTTAATTCAAGTGCTTCACAGTGTAGAACCATGTCGTCA10.3597122302158274No Hit
GCTGATCATTGTTGATTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TGCTGATCATTGTTGTTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TGCTGTCATTGTTGCTTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TGCGATCATTGTTGATTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit
TTAATAATTTTTCATAAAATTGATACAAATTTAAGAACCATTACTACAGT10.3597122302158274No Hit
TGCGATCATGTTGCTTCAAGTGCTTCACAGTGTAGAACCATGTCGTCAGT10.3597122302158274No Hit
TGCTGATCATTGTTGATTCAAGTGCTCACAGTGTAGAACCATGTCGTCAG10.3597122302158274No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)