FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008127056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008127056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Total Bases6.3 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC2250.0No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC1329.545454545454547No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC24.545454545454546No Hit
AGCACTTGAAACAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC12.272727272727273No Hit
AGCACTTAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC12.272727272727273No Hit
AGCACTTGAATCAACAATGATAGCACCATGTAGACCAAGTCTCTGCTACC12.272727272727273No Hit
AGCACTTGAATCAACAATGATTAGCACCATGTAGACCAAGTCTCTGCTAC12.272727272727273No Hit
ACCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC12.272727272727273No Hit
AGCACTTGATCAACACCATGTAGACCAAGTCTCTGCTACCGTAGAGTGCA12.272727272727273No Hit
AGCACTTGATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC12.272727272727273No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)