FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008127434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008127434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5
Total Bases725 bp
Sequences flagged as poor quality0
Sequence length145
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG240.0No Hit
CTTCCAGGCCTCCTAGTGATCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG120.0No Hit
TGGGTCATGTGGTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG120.0No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA120.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)