FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008127560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008127560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14132
Total Bases2 Mbp
Sequences flagged as poor quality0
Sequence length143-145
%GC59

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAG594042.0322671950184No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG570040.33399377299745No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA1931.3656948768751769No Hit
TGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAGC610.431644494763657No Hit
TGGGTCATGTGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAGC600.42456835550523636No Hit
CTTCCAGGCCTCCTAGTGTTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG590.4174922162468157No Hit
CTTCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA520.3679592414378715No Hit
TGGGTCTGTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAGC510.36088310217945085No Hit
TGGGTCATGTGGTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAGC510.36088310217945085No Hit
TGGGTATGTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAGC360.2547410133031418No Hit
CTTCCAGGCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA360.2547410133031418No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGAGCTGATGCCGCTGAG330.23351259552788No Hit
TGGGTCATTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAGC320.22643645626945935No Hit
TGGGTCATGTGGTTGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAGC310.21936031701103878No Hit
TGGGTCATGGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAGC300.21228417775261818No Hit
CTTCCAGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA300.21228417775261818No Hit
CTTCCAGGCCTCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA290.20520803849419758No Hit
TTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA290.20520803849419758No Hit
TGGGTCAGTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAGC280.19813189923577695No Hit
TGGGTCATGTGGTTCGGAGACAGCAAATTCTCAGTGCTGATGCCGCTGAG250.17690348146051513No Hit
CTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA240.16982734220209456No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGCTGAAGCCGCTGAG210.14859892442683273No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGCTGGTGCCGCTGAG210.14859892442683273No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCCCCTCCGAGCTCCCAGCAGGG210.14859892442683273No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCCGAG210.14859892442683273No Hit
CTTCCGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA210.14859892442683273No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGGG210.14859892442683273No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGCCGATGCCGCTGAG200.1415227851684121No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAA190.1344466459099915No Hit
CATCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG190.1344466459099915No Hit
TGGGTCATGTGGTTCGGAGGCTTACACTTGGGTCTTAGACCAAGTCTCTG190.1344466459099915No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGCTGATGCCACTGAG190.1344466459099915No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCCCAGTGCTGATGCCGCTGAG190.1344466459099915No Hit
TGGGTCATGTGGTTCGGAGGCGGCAAATTCTCAGTGCTGATGCCGCTGAG170.1202943673931503No Hit
TGGGTCATGTGGTTCGGAGACGGCAAGTTCTCAGTGCTGATGCCGCTGAG170.1202943673931503No Hit
TGGGTCATGTGGTCCGGAGACGGCAAATTCTCAGTGCTGATGCCGCTGAG160.11321822813472968No Hit
CTTCCAGGCCTCCTAGTGCCCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG150.10614208887630909No Hit
TGGGTCATGTGGTTCGGAGACGGCGAATTCTCAGTGCTGATGCCGCTGAG150.10614208887630909No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCCCCTCCTCCGAGCTCCCAGCAGGG150.10614208887630909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)