FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008127694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008127694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10681
Total Bases1.5 Mbp
Sequences flagged as poor quality0
Sequence length142-145
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA644260.31270480292108No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG255123.883531504540773No Hit
TGGGTCATGTGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG740.6928190244359143No Hit
TGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG640.5991948319445745No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGAGGTGTGTGTTGAGAA430.40258402771276103No Hit
TGGGTCATGTGGTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG430.40258402771276103No Hit
TGGGTATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG360.3370470929688231No Hit
TGGGTCTGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG350.3276846737196892No Hit
TGGGTCATGTGGTTGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG350.3276846737196892No Hit
TGGGTCATTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG320.29959741597228723No Hit
TGGGTCAGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG320.29959741597228723No Hit
TGGGTCATGGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG280.26214773897575133No Hit
CTTCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA280.26214773897575133No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGAGTTGAGAA210.19661080423181349No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGGGAA210.19661080423181349No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGCGTGTGTTGAGAA200.1872483849826795No Hit
TGGGTCATGTGGTTCGGAGACGACAAATTCTCAGTGGTGTGTGTTGAGAA190.17788596573354554No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGATGAGAA190.17788596573354554No Hit
CTTCCAGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA170.1591611272352776No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCCCAGTGGTGTGTGTTGAGAA170.1591611272352776No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAG160.14979870798614361No Hit
CTTCCAGGCCTCCTAGTGTTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG160.14979870798614361No Hit
TGGGTCATGTGGTTCGGAGACGGTAAATTCTCAGTGGTGTGTGTTGAGAA160.14979870798614361No Hit
TGGGTCATGTGGTCCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA160.14979870798614361No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCCCCTCCTCCGAGCTCCCAGCAGGG160.14979870798614361No Hit
GGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG150.14043628873700964No Hit
TGGGCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAAG150.14043628873700964No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGGA150.14043628873700964No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGCGTTGAGAA150.14043628873700964No Hit
TGGGTCATGTGGTTCGGAGACGGCAAGTTCTCAGTGGTGTGTGTTGAGAA150.14043628873700964No Hit
TTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA150.14043628873700964No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATCCTCAGTGGTGTGTGTTGAGAA140.13107386948787567No Hit
TGGGTCATGTGGTTCGGGGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA140.13107386948787567No Hit
CTTCCAGGCCTCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA140.13107386948787567No Hit
TGGGTCATGTGGTTCGGAGACAGCAAATTCTCAGTGGTGTGTGTTGAGAA130.12171145023874169No Hit
TGGGTCATGTGGTTCGGAGACGGCGAATTCTCAGTGGTGTGTGTTGAGAA130.12171145023874169No Hit
TGGGTCATGTGGTTGGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA130.12171145023874169No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGCGTGTTGAGAA130.12171145023874169No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGAGTGTGTTGAGAA120.11234903098960772No Hit
CTTCCAGGCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA120.11234903098960772No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTCGAGAA120.11234903098960772No Hit
CTTCCAGGCCTCCTAGTGCTCTGGGCTCCTCCTCCGAGCTCCCAGCAGGG120.11234903098960772No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCGGTGGTGTGTGTTGAGAA120.11234903098960772No Hit
TGGGTCATGTGGTTCGGAGGCTTACACTTGGGTCTTAGACCAAGTCTCTG120.11234903098960772No Hit
TGGGTCAAGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA110.10298661174047373No Hit
AGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA110.10298661174047373No Hit
CATCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG110.10298661174047373No Hit
CTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA110.10298661174047373No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGCGGTGTGTGTTGAGAA110.10298661174047373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)