FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008127840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008127840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209
Total Bases30.2 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG15875.5980861244019No Hit
CTTCCAGGCCTTGTTTGCCGAGGCTTACACTTGGGTCTTAGACCAAGTCT41.9138755980861244No Hit
CTTCCAGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA20.9569377990430622No Hit
CTTCCAGGCCTCCTACCTTAGCCAGAAAGGGGAGAAGGGTGGGTAGTAAC20.9569377990430622No Hit
TGGGTCATGTGGTTCGGAGGAGAAAAGACAGAGGGAGAGAGACCATCGGG20.9569377990430622No Hit
CTTCCAGGCCTCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA20.9569377990430622No Hit
CTTCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA20.9569377990430622No Hit
TGGGTCATGTGGTTCGGAGGGTGGGGGTTCGCAGCTGGACTGGGCACTAA10.4784688995215311No Hit
TGGGTCATGTGGCGGAGGAGAAAAGACAGAGGGAGAGAGACCATCGGGAA10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCTGACGACATGGTTCTACAAACTCGCTTCCAG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCTCTTGGCTCCTCCTCCGAGCTCCCAGCAGGG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGAAGAATGAAAAGATTAGAGAACCACTAGAAATTC10.4784688995215311No Hit
TGGGTCATGTGGTTCGGAGACAGCGATGAGAGTGACAGGTCTTAGACCAA10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCTGCAGGT10.4784688995215311No Hit
CTTCCAGGCCTCCTAGCGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCATCTATGCGCATCGCACGCTGCCCCACGTGC10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCCCCGAGCTCCCAGCAGGG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCCCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG10.4784688995215311No Hit
TGGGTCATGTGGTTCGGAGTGTGGGGGTTCGCAGCTGGACTGGGCACTAA10.4784688995215311No Hit
TGGGTCATGTGGTTCGGAGGCTTACACTTGGGTCTTAGACCAAGTCTCTG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGTTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG10.4784688995215311No Hit
CTTCAGGCCTCCTAGATAACTTTATAGAGAGATGAAACTAAAGAACTCTT10.4784688995215311No Hit
CATCCAGCCCTCCTAGTGCTCTAGGCTCCACCACCCCGCTCCNNGCAGNG10.4784688995215311No Hit
TGGGTCATGTGGTTCGGAGTTTGAATCCTGAACAGAAGAATAAAAATTCC10.4784688995215311No Hit
TGGGTCATGTGGTTCGGAGGCGGCGCTGAGCCTCTGCCACGACGCGTCAC10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTCTCAGCTACCCGACAGCGATGAGAGTGACAGGT10.4784688995215311No Hit
TGGGTCATGTGGTTGGGCCTGTGGAATAAGTTGACAACAAATTGACAGGA10.4784688995215311No Hit
TTCCAGGCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGAT10.4784688995215311No Hit
TGGGTCATGTGGTTCGGAGGCGCAGACCACAAAAGACAGCACTAGTAAGT10.4784688995215311No Hit
CTTCCAGGCCAGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGA10.4784688995215311No Hit
CTTCAGGCCTCCTAGTGTTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.4784688995215311No Hit
CTTCCAGGCCTCCTTGAAGAATGAAAAGATTAGAGAACTACTAGAAATTC10.4784688995215311No Hit
CTTCCAGGCTTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.4784688995215311No Hit
CTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.4784688995215311No Hit
TGGGTCATGTGGTTCGGAGGTGAACATTTGGAGTGACTAAGGAGAGCATG10.4784688995215311No Hit
CTTCCAGGCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCTCAGGACTGGGAGGAGGGTGGGGTAGAGGTG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGTTCCCAGCAGGG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGCTGGCTTCCCGGCCCCAGCTTTGAGACTCCCATC10.4784688995215311No Hit
TGGGTCATGTGGTTCCGAGGCTTACACTTGGGTCTTAGACCAAGTCTCTG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCTCTAGTCTCCTCCTCCGAGCTCCCAGCAGGG10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCTACACTGACGACAGCGATGAGAGTGACAGGT10.4784688995215311No Hit
CTTCCAGGCCTCCTAGTGCTTTGGGAGGCCGAGGCGGGTGGATCACCTGA10.4784688995215311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)