FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008127868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008127868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2939
Total Bases426.1 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG249985.02892140183737No Hit
CTTCCAGGCCTCCTAGTGTTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG250.8506294658046955No Hit
CTTCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA230.7825791085403199No Hit
TTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA200.6805035726437564No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCCCCTCCGAGCTCCCAGCAGGG140.47635250085062947No Hit
CTTCCAGGCCTCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA130.4423273222184417No Hit
CTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA120.4083021435862538No Hit
CTTCCAGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA110.374276964954066No Hit
CATCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG100.3402517863218782No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCCCCTCCTCCGAGCTCCCAGCAGGG100.3402517863218782No Hit
CTTCCAGGCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA90.3062266076896904No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCCCCGAGCTCCCAGCAGGG90.3062266076896904No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCCCCCAGCAGGG90.3062266076896904No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCGGCAGGG70.23817625042531473No Hit
CTTCCAGGCCTCCTGGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG70.23817625042531473No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGGGCTCCCAGCAGGG70.23817625042531473No Hit
CTTCCAGGCCTCCTATGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA60.2041510717931269No Hit
CTTCCAGGCCTCCTAGTGCTCCCCACAAAACCCTTCCCATGGCCCGTGTT60.2041510717931269No Hit
CTTCCAGGCCTCCTAGTGCTCTGGGCTCCTCCTCCGAGCTCCCAGCAGGG60.2041510717931269No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCTGAGCTCCCAGCAGGG50.1701258931609391No Hit
CTTCCAGGCCTCCTAGTGCTCTAAGCTCCTCCTCCGAGCTCCCAGCAGGG50.1701258931609391No Hit
CTTCCAGGCCTCCAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA50.1701258931609391No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGTAGGG50.1701258931609391No Hit
CTTCCGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA50.1701258931609391No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCGGGG50.1701258931609391No Hit
CTTCCAGGCCTCCTAAAGTGTTAAGATTACAGGTGTGAGCCACCGTGCCC40.13610071452875128No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAACTCCCAGCAGGG40.13610071452875128No Hit
TGGGTCATGTGGTTCGGAGGCTTACACTTGGGTCTTAGACCAAGTCTCTG40.13610071452875128No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCTAGCAGGG40.13610071452875128No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCACCCAGCAGGG40.13610071452875128No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTTCTCCTCCGAGCTCCCAGCAGGG40.13610071452875128No Hit
CTTCCAGGCCTCCTACCTTAGCCAGAAAGGGGAGAAGGGTGGGTAGTAAC40.13610071452875128No Hit
CTTCCAGGCCCCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG40.13610071452875128No Hit
CTTCCAGGCCTCTTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCCCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCTTTAGGCTCCTCCTCCGAGCTCCCAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGA30.10207553589656344No Hit
CTTCCAGACCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA30.10207553589656344No Hit
CTTCCAGGCCTCCTGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCACCTCCTCCGAGCTCCCAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCACAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCAAGCTCCCAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCTTCCTCCGAGCTCCCAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGATCCCAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCTCTAGACTCCTCCTCCGAGCTCCCAGCAGGG30.10207553589656344No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCAGCAGGGA30.10207553589656344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)