FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008127910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008127910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26
Total Bases3.7 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTGATCCCCACTTCCATAGAGCTTTGCCGACACAGCCA1038.46153846153847No Hit
TGGGTCATGTGGTTCGGGATGACCATTCTCTTGTGTCCTGTGACTGGGGT27.6923076923076925No Hit
CTTCCAGGCCTCCTAAAGTGTTAAGATTACAGGTGTGAGCCACCGTGCCC27.6923076923076925No Hit
TGGGTCATGTGGTGAGGATGCATGTTTTAATATTTTGTGGTTACAAAGAA13.8461538461538463No Hit
CTTCCAGGCCTCCTAAGTAGATGGGATGACAGCGATGAGAGTGACAGGTC13.8461538461538463No Hit
TGGGTCATGTGGTTCGGTACCACACGAAGGTGCGCGCCGGCCGCGGCTTC13.8461538461538463No Hit
CTTCCAGGCCTCCTGATCCCCACATCCATAGAGCTTTTCCGACACAGCCA13.8461538461538463No Hit
TGGGTCATGTGGTTCGAGGCGGTTTGAGTGAGACGAGACGAGACGCGCCC13.8461538461538463No Hit
CTTCCAGGCTCCTAAATAAATCAGACGAACAGTTCCTAGGACTTTATAGG13.8461538461538463No Hit
CTTCCAGGCCTCCTGATCCCCACTTCCATAGAGCTTTGCCGACACAACCA13.8461538461538463No Hit
CTTCCAGGCCTCCTAGTGGTTGTCTTTTGCAATTAAAAAAATGAAGTGAC13.8461538461538463No Hit
CTTCCAGGCCTCCTAGATCGCTGGGATCACAGGCATGAGCCTCCGTGCTC13.8461538461538463No Hit
CTTCCAGGCCTCCTAGTGCTGTGTATGGGAGAGGAGAAGACAGAGACTTG13.8461538461538463No Hit
CTTCCAGGCTTCCTGATCCCCACTTCCATAGAGCTTTGCCGACACAGCCA13.8461538461538463No Hit
CTTCCAGGCCTCCATTATTTGTAAATCAGAAGGTTAAATACTTCAAAAGT13.8461538461538463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)