FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008128096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008128096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Total Bases1.5 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTGTGTCGGTTTAGGGTACGGTCTTGTGGAGGGCTATT218.181818181818183No Hit
CTTCCAGGCCTCCTAGTGCAGATCTTGGTGGTAGTAGCAAATACTCAAAT19.090909090909092No Hit
TGGGTCATGTGGTTCGGAGAACCTTTGCCGAGGCTTACACTTGGGTCTTA19.090909090909092No Hit
CTTCCAGGCCTCCTAGTGCTTACGACAGCGATGGGAGTGACAGGTCTTAG19.090909090909092No Hit
CTTCCAGGCCTCCTAGTGCTTACGACAGCGATGAGAGTGACAGGTCTTAG19.090909090909092No Hit
TGGGTCATGTGGTTCGGAGGCTTACACTTGGGTCTTAGACCAAGTCTCTG19.090909090909092No Hit
TGGGTCATGTGGTTCGGAGAACCACGACAGCGATGAGAGTGACAGGTCTT19.090909090909092No Hit
TGGGTCATGTGGTTCGGAGAACCATGCGACAGCGATGAGAGTGACAGGTC19.090909090909092No Hit
TGGGTCATGTGGTTCGGAGTACGACAGCGATGAGAGTGACAGGTCTTAGA19.090909090909092No Hit
TGGGTCATGTGGTTGAGGCTTACACTTGGGTCTTAGACCAAGTCTCTGCT19.090909090909092No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)