FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008128105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008128105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128
Total Bases18.5 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTG8264.0625No Hit
TGTCACTCTCATCGCTGTCGTGGCACACCGGGAACAGCTTCCCCGCGCGG97.03125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCAGGTGTGTGT97.03125No Hit
TGTCCCTCTCATCGCTGTCGTGGCACACCGGGAACAGCTTCCCCGCGCGG10.78125No Hit
TGTCACTCTCATTGCTGTCGTGGCACACCGGGAACAGCTTCCCCGCGCGG10.78125No Hit
CAAGTGTAAGCCTCGGCAAGCAAGGCCTGGCTTGTCCCCCCAGGTGTGTG10.78125No Hit
AAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTGT10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCATGTCCCCCAGGTGTGTGC10.78125No Hit
CAAGTGTAAGGCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTG10.78125No Hit
CAAGTGTAAGCCTGGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTG10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCTCCAGGTGTGTG10.78125No Hit
TGTCACTCTCATCGCTGTCGTGGCACCCCGGGAACAGCTTCCCCGCGCGG10.78125No Hit
CAAGTGTAAGCCCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTGT10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGAGTG10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTATGTG10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCTTGGCTTGTCCCCCCAGGTGTGTG10.78125No Hit
CAAGGTAAGCTGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTGTTG10.78125No Hit
CAAGTGTTGGGGTGGGGTTTGTTGGGGTGGGTTGTCACCACATTTACGAC10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGGCTGGCAAAACCAAATCCTATACTA10.78125No Hit
TGTCACTCTCATTGCTGTCGTGGCACACCGGGAACAGCTTCCCCGCGCGT10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGACCCCCCAGGTGAGTG10.78125No Hit
CAAGTGTAAGCCTCGGCAAAAAAGGACTGGCTTGTCCCCACAGGTGTGTG10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGCCCCCCAGGTGTGTGT10.78125No Hit
CAAGTGTAAGCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTGT10.78125No Hit
CAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTGT10.78125No Hit
GTTCTGATTGGGTGGCGGGGGGGGGGGGGGGGGCGGGTGGGGGGGGGGGG10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGCCCCCCCAGGTGTGTG10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGTCTGGCTTGTCCCCCCAGGTGTGTG10.78125No Hit
CAAATGTAAGCCGAGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTG10.78125No Hit
CAAGGGTCAGCCTCGGCCAACAAGGCATGGCGTTTCCCCGCTGGGTTCTG10.78125No Hit
CAAGTGTAAGCCTCGGCAAACAAGGGCTGGCTTGTCCCCCCAGGTGTGTG10.78125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)