FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008128336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008128336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141
Total Bases20.4 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG10171.63120567375887No Hit
CTTCCAGGCCATATTTACATTACTTCAGAGGCCATACTCCTTAAGTGACA32.127659574468085No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCCCCTCCGAGCTCCCAGCAGGG21.4184397163120568No Hit
CTTCAGGCCTCCTAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCTGGG21.4184397163120568No Hit
CTTCCAGGCCTCCTAGGGAGTAAACTACTTCAATGGAGGCTGTGAATGGA21.4184397163120568No Hit
CTTCCAGGCCTCCAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA21.4184397163120568No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTACCAGCAGGG10.7092198581560284No Hit
CTTCCAGGCCTCCAGTGCTCCACCTTGCAGTCATAAATCTCATCAGCAGA10.7092198581560284No Hit
CTTCCGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.7092198581560284No Hit
CTTCCAGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCCCCTCCTCCGAGCTCCCAGCAGGG10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCAAGCTCCCAGCAGGG10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTGATGGGAAAGTGGCAGGCCCACCAGGTGCA10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTAAATAATAAGCCAAAGCCAAAAAATAAAGT10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGTAGGG10.7092198581560284No Hit
TGGGTCATGTGGTTTAGTCTTTGGTTCTGTTGATTTCTCTGATGGCTGCT10.7092198581560284No Hit
CTTCCAGGCCTCCTCACGCAGCTGATTTTTGTATTTTTTTTGTAGAGACA10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTTGGGCTTCTCTCCTTGACCTTGGGCTTCTC10.7092198581560284No Hit
CTTCTAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG10.7092198581560284No Hit
TGGGTCATGTGGTTCGGCGATGAGAGTGACAAACTGGAGACCAAGTCTCT10.7092198581560284No Hit
CTTCCAGGCCATATTTACATTACTTCAGGGGCCATACTCCTTAAGTGACA10.7092198581560284No Hit
TTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTACACTGACGACAGCGATGAGAGTGACAAAC10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTAAATAATAAGCCAAAGCCAAAAATAAAGTG10.7092198581560284No Hit
CTTCCAGGCCTCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.7092198581560284No Hit
CTTCCAGGCCTCCTATGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTTCTCAAAAACAAACAAGAACTTTCTAAGCA10.7092198581560284No Hit
CTTCCAGGCCCCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG10.7092198581560284No Hit
CTTCCAGACCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG10.7092198581560284No Hit
CTTCCAGGCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA10.7092198581560284No Hit
CTCCCAGGCCTCCTAGTGCTGGGGCCCTCCCTTCTCACTCCTGTGTTCCC10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTGGGCTTACAGGCGTGAACCACTGTGCCCAG10.7092198581560284No Hit
TGGGTCATGTGGTTCGGAGGCTTACACTTGAACTGGAGACCAAGTCTCTG10.7092198581560284No Hit
CTTCCAGGCCTCCTAGTGCTCCAGGCTCCTCCTCCGAGCTCCCAGCAGGG10.7092198581560284No Hit
TGGGTCATGTGGTTGGAGTGGGATAGGCAAGGGAAAGGTGGGGACCAGTA10.7092198581560284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)