FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008128480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008128480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30
Total Bases4.3 kbp
Sequences flagged as poor quality0
Sequence length145
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG1756.666666666666664No Hit
TGGGTCATGTGGTTCGGAGGCTTACACTTGAACTGGAGACCAAGTCTCTG310.0No Hit
CTTCCAGGCCTCCTAGTGCTCACTGACGACAGCGATGAGAGTGACAAACT26.666666666666667No Hit
CTTCCAGGCCTCCTAGTGCTCTGGGCTCCTCCTCCGAGCTCCCAGCAGGG13.3333333333333335No Hit
TGGGTCATGTGGTTCGGAGCTTGCACCCCTCCCTTTAACCTTCCGGCACC13.3333333333333335No Hit
TGGGTCATGTGGTTCGGAGCTTGCACCCCTCCCTTTAACCTTCCGACACC13.3333333333333335No Hit
CTTCCAGGCCTCCTAGTGCTACCGTAGACAGCGATGAGAGTGACAAACTG13.3333333333333335No Hit
CTTCCAGGCCTCCGAGGCTTACACTTGAACTGGAGACCAAGTCTCTGCTA13.3333333333333335No Hit
TGGGTCATGTGGTTCCGAGGCTTACACTTGAACTGGAGACCAAGTCTCTG13.3333333333333335No Hit
CTTCCAGGCCTCCTAGTGCTACCATAGACAGCGATGAGAGTGACAAACTG13.3333333333333335No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCTAGCAGGG13.3333333333333335No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)